TreeDyn: towards dynamic graphics & annotations for trees analyses
PRG inter-EPST Bio-informatique CNRS, INSERM, INRA, INRIA, Ministère de la Recherche, 2001-2003, 2002-2004
ACI IMPbio Mathématique et Physique en Biologie Moléculaire, 2004-2006
http://www.treedyn.org

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Copyright TREEDYN Copyright © 2000-2006 Chevenet F. chevenet@ird.fr

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.

Research using TreeDyn

Eichler S, Christen R, Holtje C, Westphal P, Botel J, Brettar I, Mehling A, Hofle MG.
Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting.
Appl Environ Microbiol. 2006;72(3):1858-72

Zhong W. and Sternberg PW.
Genome-Wide Prediction of C. elegans Genetic Interactions.
Science 2006; 311(5766):1481 - 4

Baudot A, Martin D, Mouren P, Chevenet F, Guenoche A, Jacq B, Brun C.
PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks.
Bioinformatics 2006; 22(2):248-50

Duchene AM, Giritch A, Hoffmann B, Cognat V, Lancelin D, Peeters NM, Zaepfel M, Marechal-Drouard L, Small ID
Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
Proc Natl Acad Sci U S A. 2005; 102(45):16484-9

Simon O, Chevenet F, Williams T, Caballero P, Lopez-Ferber M.
Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome.
Virus Genes. 2005;30(3):403-17

Baudot A, Jacq B, Brun C.
A scale of functional divergence for yeast duplicated genes revealed from analysis of the protein-protein interaction network.
Genome Biol. 2004; 5(10):R76

Martin D, Brun C, Remy E, Mouren P, Thieffry D, Jacq B.
GOToolBox: functional analysis of gene datasets based on Gene Ontology.
Genome Biol. 2004; 5(12):R101

Brun C, Chevenet F, Martin D, Wojcik J, Guenoche A, Jacq B.
Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network.
Genome Biol. 2003; 5(1):R6.

Projects

2005-2007 Bio-STIC-LR - Action Interdisciplinaire Incitative Régionale Towards an editor for the subdivision of trees into sub-trees collections formals and functionals criteria for the subdivision process, intra-inter collection trees comparaisons. F. Chevenet The TreeSub project

2004-2006 ACI IMPbio Action Concertée Incitative Informatique, Mathématique et Physique en Biologie Moléculaire. E. Douzery. Bioinformatics methods for supermatrices analysis and supertrees reconstruction, and study of the impact of missing genomic data in phylogeny Institut des Sciences de l'Evolution de Montpellier

2002-2004 Programme inter-EPST Bio-informatique CNRS, INSERM, INRA, INRIA, Ministère de la Recherche. C. Pasquier Utilisation d'une base de connaissances pour analyser les données des puces à ADN Laboratoire de Biologie Virtuelle UMR6543 CNRS - Université de Nice Sophia Antipolis

2001-2003 Programme inter-EPST Bio-informatique CNRS, INSERM, INRA, INRIA, Ministère de la Recherche. F. Chevenet « Conception et réalisation d’un éditeur d’arbres » IRD

Thanks Bañuls Anne-Laure, Barnabé Christian, Bénézé Olivier, Berry Vincent, Biron David, Boriello Caroline, Boudot Anais, Brun Christine, Cance Jerome, Chapon Virginie, Choisy Marc, Christen Richard, Corne Philippe, Douzery Emmanuel, Dujardin Jean-Pierre, Fargette Denis, Fauquet Claude, Godreuil Sylvain, Gouy Manolo, Guénoche Alain, Guez Alex, Hide Mallorie, Jacq Bernard, Leclerc Marie-Claude, Lopez-Ferber Miguel, Meeus Thierry, Oury Bruno, Pasquier Claude, Szmaragd Camille, Tauzin Marc, Tazi Loubna, Vermat Thierry, Vigouroux Yves, Zolli David
URLs
  • Phylogeny Programs
  • Phycom
  • GOToolBox
  • PWS
  • Iphylo, R. Page Blog
  • TreeBASE
  • Tree Of Life
  • Walrus
  • ActiveTcl