TreeDyn Manual
TreeDyn Prompt
The TreeDynPrompt package enables the use of tree graphical operations without using the TreeDyn interface
  • treeFile, labelFile and sciptFile must be in the ~/TreeDynPack/+/ folder
  • do not specify paths in the command line for treeFile, labelFile and scriptFile, puts only their names
  • the value for the -out flag is used for specifying the name of the outputs
  • there is 2 outputs files: a PS file and a TGF file. These outputs will be in the ~/TreeDynPack/+/ folder
  • see Scripting for sciptFile instructions
    • download and save in the TreeDynPack/+ folder the 3 followings files : Tree Labels Script (the annotation file is optional)
    Under the Windows/DOS console prompt, go to the TreeDynPack/+ folder then use the either the commands:
  • treedynw.exe data -tree treeFile -label labelFile -script scriptFile -out outFile
  • treedynw.exe data -tree t1.nwk -label t1.tlf -script t1.tds -out demo
    • Under the Linux console prompt, go to the TreeDynPack/+ folder then use the command:
  • ./treedynl -tree treeFile -label labelFile -script scriptFile -out outFile
  • ./treedynl -tree t1.nwk -label t1.tlf -script t1.tds -out demo